Illumina sequencing of Arima HiC library of Tribolium castaneum: Adul... - SRA

SRX16838531: Illumina sequencing of Arima HiC library of Tribolium castaneum: Adult male
1 ILLUMINA (Illumina NovaSeq 6000) run: 281.4M spots, 85G bases, 28.9Gb downloads

Design: Tissue was crosslinked using the Arima HiC low input protocol, and proximity ligation was performed using Arimas HiC Kit. After proximity ligation, the DNA was sheared using a Diagenode Bioruptor and then size-selected to enrich for DNA fragments of 200-600bp. An Illumina library was prepared from the sheared and size-selected DNA using the Swift Accel NGS 2S Plus kit. The final Illumina HiC library was sequenced on a NovaSeq 6000.

Submitted by: United States Department of Agriculture

Study: Genome sequencing of Tribolium castaneum GA2 (red flour beetle) adult male principal pseudohaplotype

PRJNA865805 • SRP389799 • All experiments • All runs

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Genome sequencing and assembly of Tribolium castaneum GA2 (red flour beetle) was conducted by the USDA-ARS Ag100Pest Initiative. Principal haplotype

Sample: Tribolium castaneum GA2 (red flour beetle)

SAMN30135408 • SRS14443946 • All experiments • All runs

Organism: Tribolium castaneum

Library:

Name: icTriCast4_Illumina_HiC

Instrument: Illumina NovaSeq 6000

Strategy: Hi-C